Software, Datasets, Methods Papers, & More

 

Ephus, WaveSurfer, & ScanImage – We have been involved in helping to develop and support these highly flexible software packages for general-purpose data acquisition, electrophysiology, and laser scanning microscopy, developed and maintained in Karel Svoboda’s laboratory and Vidrio Technologies.

 

Length density analysis routines – A package of tools for analyzing digitally reconstructed neuronal morphology in terms of axonal and dendritic length density. The source code can be downloaded via this link (via eLife).

​

Morphological reconstructions deposited with NeuroMorpho.org – corticospinal neurons (link), reconstructed by Ben Suter, and GABAergic CA1 retrosplenial-projecting neurons (link), reconstructed by Naoki Yamawaki.

​

Methods papers: About photostimulation-based circuit mapping, and Ephus software.

​

​